Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
LGG | rs7074642 | chr10:878359 | A/G | 3.62E-5 | 407 | 15.13 | 17.73 | 12.17 | KM Plot |
LGG | rs7077278 | chr10:911291 | A/G | 4.61E-6 | 407 | 10.57 | 17.73 | 15.02 | KM Plot |
LGG | rs7083119 | chr10:80592497 | A/G | 1.42E-7 | 407 | 0 | 10.73 | 15.97 | KM Plot |
LGG | rs7084844 | chr10:106345309 | A/G | 1.85E-8 | 407 | 0 | 10.63 | 15.67 | KM Plot |
LGG | rs7088801 | chr10:33368644 | A/G | 4.44E-16 | 407 | 15.17 | 16.28 | 4.6 | KM Plot |
LGG | rs7088956 | chr10:908693 | G/A | 1.13E-5 | 405 | 15.25 | 17.03 | 10.57 | KM Plot |
LGG | rs7089997 | chr10:122103734 | A/G | 2.17E-7 | 407 | 20.82 | 14.43 | 15.47 | KM Plot |
LGG | rs7093556 | chr10:35854700 | G/T | 1.32E-5 | 407 | 0 | 11.9 | 15.37 | KM Plot |
LGG | rs7099949 | chr10:122598631 | A/G | 2.26E-5 | 407 | 16.3 | 15.17 | 12.35 | KM Plot |
LGG | rs7100401 | chr10:64024417 | C/G | 0.000115 | 400 | 12.17 | 15.47 | 15.83 | KM Plot |
LGG | rs7101203 | chr10:98782479 | A/G | 3.75E-6 | 407 | 44.5 | 11.75 | 15.88 | KM Plot |
LGG | rs71113414 | chr15:31965812 | C/CA | 0.000122 | 404 | 15.93 | 14.87 | 11.8 | KM Plot |
LGG | rs71150448 | chr3:126268092 | A/AC | 3.78E-5 | 404 | 9.87 | 14.77 | 15.78 | KM Plot |
LGG | rs7118316 | chr11:61148169 | A/G | 0.000216 | 396 | 16.68 | 18.22 | 14.57 | KM Plot |
LGG | rs71323679 | chr3:38883676 | T/C | 4.47E-5 | 406 | 15.15 | 16.37 | 11.63 | KM Plot |